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Histone H2A Significantly Enhances In Vitro DNA Transfection

Abstract

Background

Gene transfer is a potential treatment modality of genetic disease. Efficient, practical methods of DNA transfection are currently under investigation.

Materials and Methods

A β-galactosidase reporter plasmid interacted electrostatically with his-tones, poly-l-Lys, poly-l-Arg, and a combination of poly-l-Lys and poly-l-Arg. This complex was then used to transfect COS-7 cells, β-galactosidase activity was quantified and used to compare the efficiency of gene transfection in vitro. A comparison was also made of DNA transfection with the most active histone subclass, i.e., histone H2A, in the absence and presence of an anionic liposome.

Results

There was a marked increase in DNA transfection in the presence of histone H2A when compared with the control, whereas each of the other histones and polycations showed little, if any, effect. The extent of activation depends strongly on the DNA/histone ratio and is also a function of the molarity of the final Tris-acetate, pH 8, solution. The anionic liposomes used demonstrated an inhibitory effect.

Conclusions

Histone H2A significantly enhances in vitro DNA transfection whereas other histones and anionic liposomes do not. A study of the difference between histone H2A and other histone subclasses may serve to clarify some of the mechanisms and the essential components of efficient gene delivery.

Introduction

The goal of gene transfer therapy is to deliver the gene or cDNA of interest to a target cell and for it to be transcribed and translated in that cell. Because viruses have evolved to perform this function as efficiently as possible, the main focus of this type of therapeutic effort has been the use of modified viral vectors. However, the limitations of viral vectors have included potential pathogenicity and antigenicity, and attention has therefore turned to the promise associated with non-viral means of delivering genes. Cationic liposomes have been used successfully for both in vitro and in vivo gene transfer (13). However, some cell types, particularly macrophages, have proven very difficult to transfect. Yet, for the treatment of some diseases, such as Gaucher disease, targeting these cells would be an essential part of a gene therapy therapeutic strategy. In the course of attempting to target macrophages with DNA/liposome complexes it occurred to us that liposomes containing the negatively charged lipid phosphatidylserine (PS) might target macrophages because of the existence of a PS receptor on macrophages (47). However, such negatively charged liposomes were almost entirely ineffective in transfecting macrophages. We therefore attempted to enhance in vitro gene transfection of a reporter gene in the presence of anionic liposomes and histones. We reasoned that complexing DNA with histones might improve transfection by two mechanisms: (1) un-neutralized positive charges on the histone would be bound electrostatically both by the negatively charged phosphate backbone of DNA and the anionic liposome; and (2) nuclear targeting signals in histones might improve trafficking of the DNA to the nucleus where it could be transcribed. We now report an apparently unique property of histone H2A in enhancing DNA transfection.

Materials and Methods

DNA, Histones, and Polycations

The plasmid DNA used throughout these experiments was pCMVβ (Clontech, Palo Alto, CA). pCMVβ is a β-galactosidase reporter plasmid under the control of a CMV promoter. Plasmid DNA was prepared using a Qiagen (Chatsworth, CA) Plasmid Giga kit and Endofree Plasmid Buffer Set. Dilutions of plasmid DNA were subjected to electrophoresis along with dilutions of lambda DNA-HindIII Digest (New England Biolabs, Beverly, MA) on a 0.9% SeaKemGTG (Rockland, ME) agarose gel in 1/2× Tris-phosphate (TPE) buffer. Circularized plasmid DNA was then quantified using Stratagene’s Eagle Eye II Still Video System (La Jolla, CA). Histone HI, histone H2A, histone H2B, histone H3, and histone H4 were purchased from Boehringer Mannheim (Indianapolis, IN). Poly-l-Lys hydrobromide (MW = 3970), and poly-l-Arg hydrochloride (MW = 12,100) were purchased from Sigma (St. Louis, MO).

Liposomes

The anionic liposomes contained phosphatidylcholine and phosphatidylserine (PC/PS) (57). These lipids, derived from brain, were purchased from Avanti Polar Lipids (Alabaster, AL) as stock solutions in chloroform. They were mixed in a 7:3 molar ratio in a round bottom flask. The chloroform was evaporated under argon (Parsons Airgas, San Diego, CA). Residual chloroform was eliminated under vacuum in a lyoph-ilizer (Virus Freezemobile 6, Gardiner, CA) over a 2-hr period. Sufficient sterile, double-distilled water was then introduced into the flask for a final lipid concentration of 2 mg/ml. The contents of the flask were vortexed until a homogeneous solution formed. The liposomes were then stored under argon at 4°C in sterile 15-ml polypropylene centrifuge tubes (Corning Inc., Corning, New York).

Transfection Assay

The transfection assay is based on an in vitro assay previously described by J. H. Feigner et al. (8) with the following modifications: COS-7 (African green monkey SV40-transformed kidney cells, American Type Culture Collection, Rock-ville, MD) were maintained in Dulbecco’s modified Eagle’s medium (Biowhittaker, Walkers-ville, MD) supplemented with 10% heat inactivated fetal bovine serum (FBS) (Gemini Bio-products Inc., Calabras, CA), 4 mM L-glu-tamine (Gemini Bio-products Inc.), and 100 U penicillin-100 µg streptomycin/ml medium (Gemini Bio-products Inc.). The cells were harvested with 0.05% Trypsin-0.53 mM EDTA-4Na (Life Technologies, Gaithersburg, MD), pelleted, resuspended in their usual culture medium, diluted in 0.85% NaCl (Sigma), and counted in a Coulter Zl apparatus (Coulter Corporation, Miami, FL). COS-7 cells were plated in 96-well, flat-bottom, tissue culture-treated polystyrene plates (Corning Inc.) at a density of 4 X 104 cells per well and grown overnight in a humidified incubator at 37°C in the presence of 4% CO2. Culture medium was aspirated from the overnight cultures of COS-7 cells, and the cells were overlaid with 75 µl/well of the binary DNA-histone H2A complex, the ternary DNA-histone H2A-PC/PS anionic liposome complex, or the corresponding controls. Four hours after transfection, 37.5 µl of Opti-MEM 1 (Life Technologies) containing 30% heat inactivated FBS (Gemini Bio-products Inc.) was added to each well. Twenty-four hours post-transfection, 75µl of Opti-MEM 1 containing 10% heat inactivated FBS (Gemini Bio-products Inc.) was added to each well. Forty-eight hours post-transfection, all of the medium in each well was removed. Fifty microliters of lysis buffer (0.1% Triton X-100, 250 mM Tris, pH 8.0) was added to each well. The plates were then frozen at — 70°C and thawed once. Fifty microliters of phosphate-buffered saline (PBS), pH 7.4, was added to each well, except for the last column. The last column was reserved for a β-galactosidase standard curve. In this column, 50 µl of two-fold serial dilutions of β-galactosidase grade VIII from E. coli (Sigma) were made in PBS, pH 7.4. Finally, 75 µl of 1.0 mg/ml chlorophenol red galactopyrano-side (CPRG; Boehringer Mannheim) in β-galactosidase buffer (60 mM sodium dibasic phosphate, pH 8.0, 1 mM magnesium sulfate, 10 mM KCl, 50 mM β-mercaptoethanol) was added in each well. In the presence of β-galactosidase, D-galactose is released from CPRG, yielding chlorophenol red; the red reaction product was used to quantitate the amount of β-galactosidase produced. The reaction was stopped by introducing 75 µl of 20% Tris base (pH 11) into each well after sufficient time had elapsed for the standard curve to be in the appropriate linear range, usually between 5 and 15 min after the introduction of CPRG. The plates were read in a Thermomax plate reader (Molecular Devices, Sunnyvale, CA) at 575 nm. The optical density values obtained in test wells were then compared with those in the column containing the β-galactosidase standard and the result was expressed as the quantity of β-galactosidase produced per well. All assays were performed in triplicate.

Results

Effect of Histones and Cationic Polyelectrolytes on Transfection Efficiency

Complexes of the five different subclasses of histones with DNA, poly-l-Lys, poly-l-Arg, and a combination of poly-l-Lys and poly-l-Arg were assayed for transfection efficiency. Plasmid DNA was diluted to a final concentration of 80 µg/ml in 240 mM Tris-acetate, pH 8, made up in sterile endotoxin-free water (Biowhittaker’s LAL Reagent Water, Walkersville, MD). Histones were diluted in sterile endotoxin-free water to a final concentration of 1 mg/ml. The polycations poly-l-Lys and poly-l-Arg were diluted in sterile endotoxin-free water to a final concentration of 147 and 150 µg/ml, respectively, and used in this assay in an equivalent charge ratio (9,10) as in histones. Twenty microliters each of plasmid DNA, histones, or polycations at the above concentrations was combined for 30 min at room temperature in polypropylene tubes (Corning Inc.) and then added to 40 µl of Opti-MEM 1 (Life Technologies) resulting in a final Tris-acetate concentration of 60 mM. Control experiments were performed by replacing the histone/polycation component of the above experiments with sterile endotoxin-free water in the presence and absence of DNA; when DNA was omitted, it was replaced with a corresponding volume, pH, and molarity of Tris-acetate.

The average of triplicate samples and the standard error for each combination are presented in Figure 1. DNA transfection was markedly increased, to more than 2 × 105 times the background level, in the presence of histone H2 A as compared with the control, whereas each of the other histones and polycations studied showed little, if any, effect.

Fig. 1
figure1

β-galactosidase formed (pg) by COS-7 cells transfected with pCMVβ and control medium (C), DNA alone (DNA), and after com-plexing with the five different histone subclasses (Hl, H2A, H2B, H3, H4), poly-l-Lys (Lys), poly-l-Arg (Arg), and a combination of poly-l-Lys and poly-l-Arg (Lys/Arg). Standard errors of the means of triplicates are shown.

β-galactosidase Expression in the Presence of Histone H2A with and without PC/PS Anionic Liposomes

To compare the effect of histone H2A on DNA transfection in the absence and presence of PC/PS anionic liposomes, plasmid DNA was diluted to a final concentration of 80 µg/ml in 20 mM Tris-acetate, pH 8, and combined with an equal volume of histone H2A at a concentration of 1 mg/ml in sterile endotoxin-free water (Biowhittaker’s LAL Reagent Water). The mixture, a total volume of 35 µl, was allowed to stand for 30 min at room temperature. Then 35 µI of Opti-MEM 1 was added to the binary complex. PC/PS liposomes at an initial concentration of 2 mg/ml in 20 mM Tris-acetate, pH 8, were diluted in Opti-MEM 1 to a final concentration of 0.05 mg/ml and 0.04 mg/ml. Sixty microliters of the DNA-histone mixture was then added to 30 µl of the liposomes for 30 min at room temperature. Control experiments were done in an identical fashion except that sterile water was substituted for liposomes.

Two different liposome concentrations were used. Figure 2 shows that DNA transfection was very efficient in the presence of histone H2A, but was diminished when anionic liposomes were added. In the absence of histone the liposomes alone were unable to produce any significant transfection of the COS-7 cells.

Fig. 2
figure2

µ-galactosidase formed (pg) by COS-7 cells transfected with pCMVµ with histone H2A alone (H2A) in the presence of anionic liposomes with histone (Lip 0.05 mg/ml + H2A, Lip 0.40 mg/ml + H2A) and in the presence of liposomes alone (Lip). Because dilution with the liposomes produce a slight change in ionic strength, separate H2A controls are shown. Standard errors of the means of triplicates are shown.

β-galactosidase Expression as a Function of Tris-Acetate Molarity

The effect of molarity of the solution in which the binary complex is formed was studied by varying the final Tris-acetate, pH 8, concentrations of the DNA-histone binary complex as follows: 1, 5, 15, 30, 60, and 100 mM (Fig. 3). The binary complexes studied were DNA-histone H2A and DNA-histone HI. In the controls the histone component was replaced with endotoxin-free water. In this system, β-galactosidase activity in the histone H2A experiment peaked at 60 mM Tris-acetate, pH 8. β-galactosidase activity was negligible with histone H1.

Fig. 3
figure3

β-galactosidase formed (pg) by COS-7 cells transfected with pCMVβ and histone HI () and H2A (□) as a function of the molarity of the Tris-acetate, pH 8, buffer in which the binary histone-DNA complex was made. Standard errors of the means of triplicates are shown.

β-galactosidase Expression as a Function of the DNA/Histone H2A Ratio

The effect of the DNA/histone H2A ratio was analyzed by varying the DNA concentration throughout the range of 20, 40, 80, and 160 µg/ml (Table 1). Each of these DNA concentrations was then combined with an equal volume of histone H2A at 0.03125, 0.0625, 0.125, 0.25, 0.5, 1, 2, and 4 mg/ml, respectively, in triplicate for 30 min at room temperature in polypropylene tubes. The volume of the resulting binary complex was 40 µl; and this volume was combined with 40 βl of Opti-MEM 1, yielding a final Tris-acetate, pH 8, concentration of 60 mM. As shown in Table 1, only 3 of the 32 combinations tested resulted in significant β-galactosidase activity; these were the combinations of histone H2A at 1 mg/ml (71.6 µM) with DNA at 80 µg/ml (0.0168 µM), and histone H2A at 0.5 mg/ml (35.8 µM) with DNA at 40 µg/ml (0.00084 µM) and 20 µg/ml (0.0042 µM), respectively. Peak activity was observed using the combination of histone H2A at 0.5 mg/ml (35.8/xM) and DNA at 40 jutg/ml (0.0084/xM), a molar ratio of about 4000:1 for histone to DNA.

Table 1 β-galactosidase activity g) of COS-7 cells transfected with pCMVβ (20, 40, 80, and 160 µg/ml) and histone H2A (0.03125, 0.0625, 0.125, 0.25, 0.5, 1, 2, and 4 mg/ml)

Discussion

In the transfection assay that we have described, DNA transfection is significantly enhanced in the presence of histone H2A, and this activity is partially inhibited in the presence of anionic liposomes. Transfection efficiency in the presence of histone H2A increases as a function of the molarity of the medium in which the binary complex is formed. Significantly, neither histone HI, H2B, H3, H4, poly-l-lysine, poly-l-arginine, nor a combination of these two polycations at an equivalent charge ratio showed any significant effect on DNA transfection. This shows clearly that our results cannot be attributed solely to the presence of basic amino acids but to a unique property of the histone H2A molecule.

Little is known of the effect of histones on the transfection of cells. Histone H2A has been reported to increase the efficiency of retroviral infection, possibly as a result of the basic amino acid transport capacity of the cell surface receptor for ecotropic murine retroviruses (11). A few very recent publications studying the effect of histones on gene expression in the presence of liposomes and polyamines have appeared (1214). The postulated mechanism by which histone HI increases gene transfection is through DNA condensation. In these studies, histone H1 was considered to be the subclass of histones that mediates efficient gene transfer. In our assay system histone H1 manifested negligible activity compared with histone H2A. The difference in our results may be accounted for by the composition of our polyplexes (cationic polymer/nucleic acid complex) (15), histone source, and the manner in which the components of our assay were diluted, i.e., Tris-acetate buffer vs. Opti-MEM 1. We have also tried to limit the endotoxin content in our system as it is known to diminish the efficiency of DNA transfection (16), and all analyses were performed in the absence of chloroquine.

The mechanism of the striking effect of histone H2A on transfection efficiency is not yet clear. It could be that this histone increases the number of plasmids that enter the cell or that it improves the efficiency with which the plasmids are expressed, either by facilitating their entry into the nucleus or by increasing the efficiency with which they are transcribed. The extraordinary difference between the effect of histone H2A and the other histones tested is of special interest and may lead to further insights into the mechanism of action. It may be that there are amino acid sequences in histone H2A, not represented in other histones, that are important for efficient transfection. It may also be that the extent or location of acetylated residues in this histone are of special importance, since a correlation between histone acetylation and transcriptionally active chromatin is known to exist (17,18).

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Acknowledgements

Drs. P. L. Feigner and O. Zelphati (Vical, Inc., San Diego, CA) are gratefully acknowledged for numerous helpful discussions. We thank Dr. Timo L. M. ten Hagen (Rotterdam, The Netherlands) for his gift of PC/PS liposomes that were used in preliminary experiments. Susan Sackmann is gratefully acknowledged for skillful technical assistance. D. Balicki is a recipient of The Medical Research Council of Canada’s Clinician-Scientist Award. This is manuscript 11055-MEM from The Scripps Research Institute. This work was supported by National Institutes of Health grant RR00833 and the Stein Endowment Fund.

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Correspondence to Dr. Ernest Beutler.

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